Sorry for my late reply and thanks for replying

Correct; The issue you referenced is the problem I'm experiencing.
To add some background to this, in my current C10.2 installation;
1) We have FM, Transformer and the BI Server all installed on the same physical server.
2) I think Cognos FM and Transformer was either installed or moved into a sub-directory of the main BI Server install directory.
3) Opening Cognos Configuration for the BI Server (I believe) is therefore sharing it's configuration with FM & Transformer.
4) In the C10 environment, I don't see any User or System Environment variables that reference "JAVA HOME".
Here are the C10 installs;
E:\cognos\c10_22\bin\cogconfigw.exe <- Cognos Config
E:\cognos\c10_22\bin\cogtr.exe <- Transformer
E:\cognos\c10_22\bin\FM.exe <- Framework Mgr
In the C11 environment;
1) After installing the BI Server component, you cannot install FM or TR as a subdirectory from the BI Server component, all have to be installed in separate folders.
2) I checked the User and System Environment variables and noticed there are no specific references to a "JAVA HOME" variable.
C11 Install paths;
E:\cognos\analytics\bin64\cogconfigw.exe
E:\cognos\framework\bin\FM.exe
C11 PATH Variables;
E:\cognos\analytics\bin64
E:\cognos\analytics\bin\
E:\cognos\framework\bin64
I installed all C11 components as Run As > Administrator.
Any other clues? Thanks.